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Department of Chemistry and Chemical Biology |
Questions and problems?Machine precisionMy results differ from one machine to another.Rule of thumb: If the energy is the same for the first hundred steps or so, and (if the numbers are not close to 0) diverge only by on the order of 1 in the 3rd significant figure after 1000 steps, the results are exactly the same, modulo machine precision; slight differences in the ordering of operations by compilers and different roundoff procedures used by different hardware lead to slight differences accumulated over many cycles. This ordinarily leads to different numbers of steps before convergence in energy minimization. If the numbers are small, this effect can be exaggerated, but average properties (in dynamics) are likely to agree better.
Example: final state of energy minimization.
Web Masters <webadmin@www.amber.ucsf.edu> Last modified: Tue Nov 15 18:50:24 1994 |
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